Assembly polishing
==================

We are going to do polishing to optimize our assembly:
1. Polishing with pilon using Illumina data
2. Polishing with racon and medaka using Nanopore data is included in the docs but not necessary with current ONT technology

.. toctree::
   :maxdepth: 1

   pilon/index.rst
   medaka/index.rst
   nanopolish/index.rst