Long Re(ad)volution workshop
1.1
Setting up your de.NBI Cloud SimpleVM instance
Command Line Introduction: Excercises
The Tutorial Data Set
Basecalling
Inspect the fast5 files
Basecalling with dorado
Inspect the output
The results with complete data
Merge fastqs
Data Quality Assessment
Assembly
Assembly polishing
Genome annotation
Long Re(ad)volution workshop
Basecalling
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Basecalling
We will perform a basecalling of the raw data with guppy.
Inspect the fast5 files
Basecalling with dorado
Inspect the output
The results with complete data
Merge fastqs