Welcome to the de.NBI Long Read Training Course!
Welcome to the two-day nanopore training course. This tutorial will guide you through the typical steps of a nanopore assembly of a microbial genome.
- Setting up your de.NBI Cloud SimpleVM instance
- Command Line Introduction: Excercises
- Excercise 1.1: Directory structure
- Excercise 1.2: Directory structure
- Excercise 2: Tab completion
- Excercise 3: Basic File Operations
- Excercise 4: Links
- Excercise 5: Display File Content
- Excercise 6: Wildcards
- Excercise 7: grep and wc
- Excercise 8: Streams
- Excercise 9: Tabular Data
- Excercise 10: Shell scripts
- The Tutorial Data Set
- Basecalling
- Data Quality Assessment
- Assembly
- Assembly polishing
- Genome annotation