Long Re(ad)volution workshop
1.1
Setting up your de.NBI Cloud SimpleVM instance
Command Line Introduction: Excercises
The Tutorial Data Set
Basecalling
Data Quality Assessment
Assembly
Assembly polishing
Assembly polishing with pilon
Assembly polishing with racon and medaka
Polishing with Racon
Polishing with medaka
Assembly evaluation with quast
Further polishing with pilon
Assembly evaluation with quast
Assembly polishing with nanopolish
Genome annotation
Long Re(ad)volution workshop
Assembly polishing
Assembly polishing with racon and medaka
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Assembly polishing with racon and medaka
We are going to polish our assembly using racon and medaka now.
Polishing with Racon
Polishing with medaka
Assembly evaluation with quast
Further polishing with pilon
Assembly evaluation with quast